(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: ZYZ
File name: alatis_output_compound.sdf
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Formula: C16H23N1O6Se1 Compound mass: 404.31600000000003 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.56
- Compound probability: 0.62
List of identified carbohydrate fragments:
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C9H12N1O4
Fragment probability: 0.53
Fragment mass: 187.1926
Fragment main chain atoms: [14, 13, 17, 15, 23, 16, 1]
Fragment all atoms: [14, 18, 22, 13, 45, 9, 41, 42, 11, 17, 15, 19, 23, 16, 2, 3, 28, 29, 30, 31, 32, 33, 1, 25, 26, 27]
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C4H6N1O2
Fragment probability: 0.56
Fragment mass: 71.07770000000001
Fragment main chain atoms: [14, 22, 4]
Fragment all atoms: [14, 13, 45, 9, 41, 42, 17, 18, 22, 4, 34, 35, 36]
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C4H9O1
Fragment probability: 0.56
Fragment mass: 57.113899999999994
Fragment main chain atoms: [1, 16, 2]
Fragment all atoms: [1, 25, 26, 27, 16, 3, 31, 32, 33, 23, 2, 28, 29, 30]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| ZYZ | 3D9C |
| B1C | 5TU4 |
| FC0 | 4BP9 2XE4 |
| KI2 | 1U8G 1NH0 |
| QPH | 1NT5 1NT6 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.