Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: XX5
File name: alatis_output_compound.sdf

Formula: C19Cl2H23N3O4
Compound mass: 428.3087
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.50
  • Compound probability: 0.46


List of identified carbohydrate fragments:

  • C8H9N1O4
    Fragment probability: 0.50
    Fragment mass: 159.13960000000003
    Fragment main chain atoms: [18, 16, 23, 17, 19]
    Fragment all atoms: [18, 26, 25, 50, 16, 47, 3, 35, 36, 11, 46, 23, 17, 48, 7, 40, 41, 15, 19, 27, 28, 51]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
XX51R4L
56A4WHK
3RQ7
5DNJ
4WHL
4X9R
4MLU
4X9V
4RCP
4WHH
6AX4
33K4QIA
OLD3U8I
AVO6FNT

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).