(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: XMM
File name: alatis_output_compound.sdf
|
Formula: Br1C14Cl1H15N1O6 Compound mass: 408.6284 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.52
List of identified carbohydrate fragments:
-
C6H11O6
Fragment probability: 1.00
Fragment mass: 179.14750000000006
Fragment main chain atoms: [13, 12, 11, 8, 23, 14, 32, 21, 38, 20, 31, 37, 19, 30, 36]
Fragment all atoms: [13, 12, 11, 8, 29, 4, 27, 28, 18, 35, 23, 14, 33, 22, 32, 21, 38, 20, 31, 37, 19, 30, 36]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| XMM | 3AX4 4Z8B 5UUY 5TG3 1ZGS 2JE9 4L8Q 2JEC 5T7P 2JE7 3SH3 4NOT 3RS6 4K21 2JDZ 5U37 3U4X 4MYE 6CJ9 |
| BS7 | 6ARO |
| 3XN | 4X5Q |
| GAT | 1EFI |
| JFZ | 2WVU |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.