(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: XC5
File name: alatis_output_compound.sdf
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Formula: C10H18N3O12P3 Compound mass: 465.1835 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.32
List of identified carbohydrate fragments:
-
C5H8N1O3
Fragment probability: 1.00
Fragment mass: 130.1216
Fragment main chain atoms: [3, 6, 7, 24, 9]
Fragment all atoms: [3, 31, 32, 6, 37, 14, 42, 7, 38, 4, 33, 34, 23, 24, 9, 39, 13]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| XC5 | 6GO5 5VEZ 5V1P |
| 2TM | 5X22 4OIO 6P1T 6P1W 6Q52 4Q4Z |
| 6CF | 4GXJ 4F5R 3RJK 3RJI 3RJH 4F5N 4F5Q 4F5O |
| UPC | 3SPZ 3SPY 4M28 |
| DJJ | 6CTT 6BEM |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.