(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: VXX
File name: alatis_output_compound.sdf
|
Formula: C9H10O4 Compound mass: 182.17290000000008 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.97
- Compound probability: 0.31
List of identified carbohydrate fragments:
-
C2H3O2
Fragment probability: 0.97
Fragment mass: 55.0552
Fragment main chain atoms: [9, 13, 2]
Fragment all atoms: [9, 11, 13, 2, 17, 18, 19]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| VXX | 1WB6 2YE3 |
| SYR | 1WB5 |
| VNL | 4L6D 3SYS 2Y2X 5Z7B 5X1J 1XLR 4EYG 2AHC |
| TWO | 4EGN |
| 7WR | 5X1K |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.