(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: VDO
File name: alatis_output_compound.sdf
|
Formula: C14H26N1O11P1 Compound mass: 415.32910000000004 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.44
List of identified carbohydrate fragments:
-
C7H12N1O4
Fragment probability: 1.00
Fragment mass: 175.18190000000007
Fragment main chain atoms: [2, 6, 10, 14, 12, 8]
Fragment all atoms: [2, 29, 30, 6, 35, 4, 33, 34, 26, 10, 39, 18, 47, 14, 43, 22, 51, 12, 41, 20, 49, 8, 37, 15]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| VDO | 2WTX 4F97 |
| VDM | 5HVM 5HVL 5HVO 5Z66 2JF4 |
| OEV | 3D50 |
| N8V | 3WEZ |
| AF1 | 1BG9 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.