Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: V
File name: alatis_output_compound.sdf

Formula: V1
Compound mass: 50.9415
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.00
  • Compound probability: 0.00


List of identified carbohydrate fragments:



Most similar ligands:

Ligand Expo IDPDB protein complex ID
V1QYL
6DYH
6DYL
VVO6DB2
6EDH
5BK9
6ALR
AZI1PPJ
4RBM
5AG2
4JIJ
4NAJ
5Z84
5ZCP
4Y8H
4QUJ
3N7U
2JLM
3MIE
4Y8G
3P9F
2VUO
3PG9
1EKJ
3GAS
6BGQ
3HFU
2CK3
2BG6
3FUC
1NXD
3C61
1RSV
2BGA
1BJE
6BG4
5A12
6ALV
1MNG
3ZWH
2JIZ
3MIH
3E7B
2FHX
5JDT
1SZ6
2OZP
1VR8
1T0R
4NB7
2E86
2VHB
2J8M
1OQ4
4POE
2A06
2RG9
1ONK
4QUB
2IVB
2TSB
3E7A
4C5P
2H88
3RC3
5L6X
2VQ1
1ZLZ
1SWM
4QU9
6BGK
4JYY
5Z86
4QUE
3PG8
4QUH
3LJ9
2BBR
3ABW
3AH9
4JAC
2J8R
1PP9
1ZWN
5IBP
6D4B
6BFO
2B5Z
1OS2
3MOO
1YAZ
4FSK
2ZO5
1AVN
5ZCQ
2BFZ
4OQC
3D2O
4OTX
2VI7
1ZYT
3QGU
2IUO
1IVJ
4Y84
1A4E
3CWB
3DHG
3L75
2A4T
4QU0
3S7W
3PHM
4YTB
1JKV
3G3X
6BGR
2MHR
2Y68
3DWQ
1UGF
5MUN
3L74
4ESJ
1LKP
6BFJ
5ZCO
1OPM
1W6W
3MIC
3P9O
2CUU
1KOP
2JJ2
2D23
1I3E
2WJP
2WWN
3QM9
5T30
5O4Q
1TH2
4N7T
1OCZ
3JTM
1QWL
4QTY
5Z85
1VNC
3E15
3DKE
1ISC
4QUQ
3VVK
3BGO
1U06
2IVG
1AVM
3B4P
2NAD
5IN2
3P24
3BAX
4JKX
3NSR
5DN9
6BDV
6BG0
3MID
1RSR
2WSR
2JJ1
3SID
1QWM
4QUG
4QUL
4PUV
3LO1
4PR8
5OHH
1FS9
1PHM
3G3W
2BL1
2GSD
1ASQ
6R2U
1S6A
5MBA
1UGB
4YTG
6D4C
1RAY
2BCP
2FBW
3ZJS
2EIE
4BFG
6BFL
4XYB
4JQG
5NYW
3ZJO
4WZV
4EB2
3BAW
1CVA
2WQY
2BFK
3SWJ
3UCN
2BFL
3G3V
1SXZ
5FQU
1NEG
3HWL
1S8N
3MLL
3L2X
1AZI
5EDF
4PJY
2O5M
2X5O
VN34QIH
6HWR
5Z5A
3ZWK
H1W6HWR

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).