(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: UPP
File name: alatis_output_compound.sdf
|
Formula: C15H18N2O12P2 Compound mass: 480.25649999999985 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.32
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.12100000000004
Fragment main chain atoms: [27, 14, 13, 12, 10]
Fragment all atoms: [27, 14, 44, 17, 13, 43, 20, 47, 12, 42, 19, 46, 10, 41, 8, 39, 40, 26]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| UPP | 3BXO 2UDP |
| TLO | 6M81 3RC1 3RC7 3RCB 3PFG 3RC9 6M83 4J7H 3RC2 6M82 |
| 94T | 5NPR 5NPS |
| TPE | 1DZT |
| UDH | 4EE3 1TW5 4KRV 2AH9 2AEC 3EE5 2AE7 2AES 2AGD |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.