(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: U33
File name: alatis_output_compound.sdf
|
Formula: Br1C9H11N2O5 Compound mass: 307.0976 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.53
List of identified carbohydrate fragments:
-
C5H9N1O3
Fragment probability: 1.00
Fragment mass: 131.1295
Fragment main chain atoms: [5, 6, 17, 7, 1]
Fragment all atoms: [5, 23, 14, 28, 6, 24, 3, 21, 22, 13, 27, 17, 7, 25, 12, 1, 18, 19]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| U33 | 2GRB |
| GPU | 3T3G |
| DUR | 1RXS 4AOO 6K5K 4APZ 2I7D 5Y5P 1OE5 4V31 4B0H 6MJK 2C53 1BDU 4AOZ 2YB0 1TDU 5IOQ 3KUK |
| DDU | 1DDU 1AOB |
| LLT | 3QEO 3HP1 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.