(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: TDC
File name: alatis_output_compound.sdf
|
Formula: C22H22N2O7 Compound mass: 426.4183999999999 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.20
- Compound probability: 0.10
List of identified carbohydrate fragments:
-
C2H6N1
Fragment probability: 0.20
Fragment mass: 71.1008
Fragment main chain atoms: [2, 24, 3]
Fragment all atoms: [2, 35, 36, 37, 24, 3, 38, 39, 40]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| TDC | 5FKN 5FKO 5TUF 2VPR 2VKV 2XPU 4D7N 5FKK 5FKM 5MRU 2XPS 4D7M 2XPT 5FKL |
| 4DM | 3FK7 |
| ITC | 4B1R 2X9D 4V2G |
| DXT | 6RBL 5OM2 6RGX 2O7O 2XRL 6RCR 5OM3 |
| OTC | 2XPW |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.