(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: TB0
File name: alatis_output_compound.sdf
|
Formula: C5H9N1 Compound mass: 83.13130000000005 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.41
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C5H9N1
Fragment probability: 0.41
Fragment mass: 83.1313
Fragment main chain atoms: [1, 5, 6, 4]
Fragment all atoms: [1, 7, 8, 9, 5, 2, 3, 10, 11, 12, 13, 14, 15, 6, 4]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| TB0 | 2ZPE 2ZPH 2ZPG 2ZPI 2ZPF |
| NPN | 2HBF 2MYD 112M |
| NBN | 105M 108M 1GEM 103M 1NBB 2YIV 107M 1GEI 104M 111M 1GEJ 101M 2MYC 2HBE 1S61 1GEK |
| NTB | 1MTB 2FGU 2FGV |
| 3CN | 5SXU 3C0R 3PT2 4RF0 3PRM 5CAW 3PRP 6GLC 5N2W 3PSE 4HXD 4RF1 5N38 3BY4 4IUM |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.