(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: SR8
File name: alatis_output_compound.sdf
|
Formula: C19H20N4O3 Compound mass: 352.3863 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.38
- Compound probability: 0.08
List of identified carbohydrate fragments:
-
C2H3
Fragment probability: 0.38
Fragment mass: 69.1246
Fragment main chain atoms: [3, 19]
Fragment all atoms: [3, 33, 34, 35, 19]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| SR8 | 5AR7 |
| Q1A | 4NEU |
| JGA | 5QDP |
| 34Y | 5IUH |
| 729 | 5IUG |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
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- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.