(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: SKH
File name: alatis_output_compound.sdf
|
Formula: C12H22N2O6 Compound mass: 290.3120000000002 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.62
- Compound probability: 0.45
List of identified carbohydrate fragments:
-
C6H9O3
Fragment probability: 0.62
Fragment mass: 100.1155
Fragment main chain atoms: [10, 7, 12, 1]
Fragment all atoms: [10, 17, 16, 40, 7, 34, 35, 12, 6, 32, 33, 9, 20, 42, 1, 21, 22, 23]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| HLY | 5OJO |
| SKH | 5OJO |
| KHB | 5ZGC 5Z94 5Z93 |
| BTK | 4YYJ 4V1C 6MIL 4YYG 5U2J 6MIQ 4YY6 3MUL 5B75 4YYM |
| PRK | 3PDH 4PK2 5B77 4I7D 3MUK 6MIO |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.