• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: SGB
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.83
• Compound probability: 0.86

List of identified carbohydrate fragments:

• C₃H₄N₁O₃
  Fragment probability: 0.83
  Fragment mass: 104.08439999999999
  Fragment main chain atoms: [4, 6, 7]
  Fragment all atoms: [4, 24, 25, 12, 6, 27, 8, 7, 9, 10, 30]
  

• C₆H₁₁N₁O₄
  Fragment probability: 0.73
  Fragment mass: 209.17939999999996
  Fragment main chain atoms: [7, 6, 4, 12, 14, 13, 5, 1]
  Fragment all atoms: [7, 9, 10, 30, 6, 27, 8, 4, 24, 25, 12, 14, 13, 5, 26, 2, 18, 19, 20, 1, 15, 16, 17]
  

• C₃H₇O₁
  Fragment probability: 0.58
  Fragment mass: 59.0868
  Fragment main chain atoms: [1, 5, 2]
  Fragment all atoms: [1, 15, 16, 17, 5, 26, 13, 2, 18, 19, 20]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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