Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: SEY
File name: alatis_output_compound.sdf

Formula: C1H4N2Se1
Compound mass: 123.01570000000002
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.00
  • Compound probability: 0.00


List of identified carbohydrate fragments:



Most similar ligands:

Ligand Expo IDPDB protein complex ID
SEY6CCZ
5T3F
5T3G
5V51
4EZD
5T3H
5T3I
5T3L
5T3J
URE4EV8
4EVT
3TPP
3TPJ
5I4Y
2OMG
2OLY
5I4X
4EVP
2Q8V
5AUN
5I53
6NFP
3MFF
1DDR
2OM0
4EVA
3UQU
3EP5
1XR9
6EWN
5ULP
4U4M
1EP5
4EV9
4GY3
3UQX
4QG3
3P06
1HQG
3BCT
5II0
5I54
1BV3
2F56
4FR8
2OMH
5NI9
5APW
3UMV
5NXF
4FQF
2XLA
4GXE
1XDQ
3ZYR
4FCO
2F30
4TPU
4OMX
6DHC
6FEJ
5V0N
4FGX
2I1J
2XL7
3RPW
3NLS
2YHC
5APU
2R2X
1XR8
5NIG
3UB6
3MSF
3VA7
4YV8
6QDY
2J8X
3L4P
4CE8
2I1K
GAI2ONP
1O04
2DDZ
5H6A
4N7H
5L13
4AM8
5VJB
4D50
3INJ
3N83
1O02
6A4O
5G5V
3N80
5H6D
1ZUM
6GXQ
6C1K
5SZD
2CEV
3MV1
4CEV
2ZFZ
3N82
2PNL
4LYP
6FTM
4KWF
2ONM
3SZ9
6RFW
6A4N
6RGK
6FDS
3UHM
2EF5
5NDI
4KWG
6FRD
1O01
4LJA
3N81
1RBW
5VJ9
5GWB
5CEV
3EQY
4F8O
4F8N
3LAS
1KP3
3U4F
1UMJ
6A4P
6FE3
6RB6
5L8Y
4WQD
5H6E
5G2B
6A4Q
6RFN
1JXM
4ITC
5NDH
5U3G
6FDX
1XCL
5NOM
5G57
1T8A
5H6C
4EF7
4F8L
5L8C
3M6Z
3GNU
6FDW
2DPK
1KP2
5NZ6
2F2Q
4PHL
4GLL
229L
3EQS
1PXV
4PXJ
5NWQ
2GV9
5T83
4HSE
5NEF
TOU2F4A
2F5W
4WP4
SE3RJ1
2GJ8
6OP3
5FF4
6OP2
3UHJ
1PAE
5BVG
3HRD
3SZ0
2ARH
4CJ9
3USP

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).