(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: SC2
File name: alatis_output_compound.sdf
|
Formula: C5H9N1O3S1 Compound mass: 163.19450000000003 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.59
- Compound probability: 0.90
List of identified carbohydrate fragments:
-
C5H7N1O3
Fragment probability: 0.59
Fragment mass: 130.1216
Fragment main chain atoms: [5, 4, 6, 3, 1]
Fragment all atoms: [5, 8, 9, 18, 4, 16, 2, 14, 15, 6, 3, 7, 1, 11, 12, 13]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 1ZT | |
| SC2 | 2J58 2J2P 207L 5ICX 2J1G 5HPM 5NN4 |
| 08P | 3U4S |
| J3D | 6EAX |
| AYA | 5IDA 1J4U 1J4T 1VBO 1D0W 1AH4 4KUD 2V4I 6G2J 1OUW 6G72 6FYY 1VBP 5ID8 4KUI 1EKO 5JZZ 6FYX 1AH3 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.