Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
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v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: S4U
File name: alatis_output_compound.sdf

Formula: C9H13N2O8P1S1
Compound mass: 340.2464000000001
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.48


List of identified carbohydrate fragments:

  • C5H8N1O4
    Fragment probability: 1.00
    Fragment mass: 146.121
    Fragment main chain atoms: [7, 6, 4, 19, 8]
    Fragment all atoms: [7, 28, 13, 32, 6, 27, 12, 31, 4, 26, 3, 24, 25, 18, 19, 8, 29, 11]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
4SU3J53
5IB7
4QCY
4WRO
4V78
4V6L
6CAE
4QJT
5MDW
5J4B
6QNR
4WQ1
5WE6
3J9Y
5EL4
6O97
4WQR
4V72
5WIT
5WF0
4WZD
6N1D
5WIS
4W2I
5IBB
4ZER
4Z8C
6OT3
4WPO
2Y0Y
4W2G
4V7A
4V5Q
3J5J
6QNQ
5EL6
5J4C
3JCN
5LMS
4V6Z
1VY4
4WRA
5WFK
3J5B
5IB8
5LZD
2Y0W
1B23
3V11
4WZO
5HD1
5J4D
6ND6
3JCJ
5WE4
3J4W
3J0U
5DOY
6BOH
6GSL
6OF1
4RBB
4V79
3BBV
4V42
4V6O
5AFI
5W4K
4WR6
5LMT
5LMU
4V5S
4Z3S
5VP2
6GSJ
4WQY
3J0Z
4V5R
3J5F
5HCP
2Y12
5HAU
6OSK
5LZA
4V6R
3J59
5E7K
4V6Q
4V5P
4QCM
4V74
6B4V
4QCQ
3IZV
5LZE
4V73
4WU1
4W2H
4RB5
4QCU
4WQF
4Y4P
1VY5
4V6S
6OST
3J0X
5MDY
1JGO
5HCQ
4Z3Q
4WQU
6ND5
5F8K
4W2F
4WT1
3J57
3J4V
4V6K
5JTE
4V6P
5LMQ
3J4Z
6UO1
2OM7
5ZLU
3J10
4W2E
3J13
5JU8
6OSQ
1GIX
4RBH
4WSD
6ORE
4V6V
5L3P
3J5H
6BOK
4RB7
4QD0
5WFS
3J4Y
6N9F
4V77
4RB9
4V5L
5HCR
5LMV
5J8B
2FMT
5WDT
1JGP
1EFW
6N9E
3IZW
6CFJ
5EL7
2XQD
4QCS
3J5D
4V6Y
4RBF
2Y10
2Y18
1VY7
4V6N
5E81
4V75
4V76
5IQR
2Y14
3CW5
4RBD
3CW6
5EL5
4RBJ
1VY6
6OUO
4QCO
3J0V
4V70
5MDV
2Y0U
5LMR
5LZF
6ORL
5ME0
4QCW
3J55
4V71
5LZB
1EG0
5LZC
1JGQ
2OW8
5L4O
5ME1
2Y16
3J36
4V4I
4JYZ
1C0A
5MDZ
1GSG
S4U
PYO6BRR
2C4Q
5YX2
LC
C5P1IV4
1ME0
5EBE
4GTZ
2H92
1ME1
2YYU
3F0G
1RNN
1LP6
4DXL
5KM2
4JEM
3DJX
2XCU
5IWY
1H48
1W57
3F0F
2EX1
6OH2
5H5K
6I1R
1RO8
5FA1
4C8E
5X4K
6APL
5DV2
6OH4
1QF9
4O6M
1H47
2VFL
5ZRH
1GQC
3UKD
4EMD
4C8G
1XRJ
2II6
4DW3
3ASZ
2GN2
5B8F
4G0Q
5B6D
4HIU
1UJ2
2UKD
2IX0
6CKL
4BES
1U80
4DIE
2Z4T
4FWR
2XWM
6MGB
6MGC
3AKE
1KNJ
2ILV
3ELB
2ZWI
4ZCP
4ZU0
4LMC
2IIB
4HI5
1RNM
3LUG
1W77
5A0V
3F1J
4BER
2PMP
1H7T
3W8N
4O7Y
2IIQ
4K6Q
5UKD
4XSV
1JY8
4O86
2WNB
1H7F

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).