• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: RVX
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.83
• Compound probability: 0.93

List of identified carbohydrate fragments:

• C₇H₁₂N₁O₂
  Fragment probability: 0.53
  Fragment mass: 148.1197
  Fragment main chain atoms: [4, 13, 15, 14, 5]
  Fragment all atoms: [4, 25, 26, 6, 29, 1, 2, 16, 17, 18, 19, 20, 21, 13, 15, 14, 5, 27, 28, 7, 30, 8, 9]
  

• C₇H₁₃N₁O₄
  Fragment probability: 0.70
  Fragment mass: 193.13710000000003
  Fragment main chain atoms: [4, 13, 15, 14, 5, 7, 8]
  Fragment all atoms: [4, 25, 26, 6, 29, 1, 2, 16, 17, 18, 19, 20, 21, 13, 15, 14, 5, 27, 28, 7, 30, 9, 8, 10, 11, 33]
  

• C₄H₉O₁
  Fragment probability: 0.56
  Fragment mass: 73.1133
  Fragment main chain atoms: [4, 6, 1]
  Fragment all atoms: [4, 25, 26, 13, 6, 29, 2, 19, 20, 21, 1, 16, 17, 18]
  

• C₅H₁₂O₁
  Fragment probability: 0.50
  Fragment mass: 121.05149999999999
  Fragment main chain atoms: [4, 13, 15, 3]
  Fragment all atoms: [4, 25, 26, 6, 29, 1, 2, 16, 17, 18, 19, 20, 21, 13, 15, 3, 22, 23, 24]
  

• C₃H₄N₁O₃
  Fragment probability: 0.83
  Fragment mass: 104.08439999999999
  Fragment main chain atoms: [5, 7, 8]
  Fragment all atoms: [5, 27, 28, 14, 7, 30, 9, 8, 10, 11, 33]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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