• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: RFL
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 1.00
• Compound probability: 0.42

List of identified carbohydrate fragments:

• C₅H₈N₁O₄
  Fragment probability: 1.00
  Fragment mass: 146.121
  Fragment main chain atoms: [21, 22, 27, 52, 17]
  Fragment all atoms: [21, 79, 42, 88, 22, 80, 43, 89, 27, 81, 38, 52, 17, 77, 8, 71, 72, 51]
  

• C₂H₄O₃
  Fragment probability: 0.97
  Fragment mass: 263.0561
  Fragment main chain atoms: [7, 50, 54, 53, 55, 51, 8]
  Fragment all atoms: [7, 69, 70, 50, 54, 53, 55, 51, 8, 71, 72]
  

• C₅H₁₀N₁O₄
  Fragment probability: 0.82
  Fragment mass: 131.1295
  Fragment main chain atoms: [7, 16, 20, 15]
  Fragment all atoms: [7, 69, 70, 50, 16, 76, 40, 86, 20, 78, 41, 87, 15, 75, 6, 67, 68, 37, 39, 85]
  

• C₃H₆O₃
  Fragment probability: 1.00
  Fragment mass: 103.09630000000001
  Fragment main chain atoms: [7, 16, 20]
  Fragment all atoms: [7, 69, 70, 50, 16, 76, 40, 86, 20, 78, 41, 87]
  

• C₆H₁₂N₁O₆
  Fragment probability: 0.92
  Fragment mass: 334.1338
  Fragment main chain atoms: [8, 51, 55, 53, 54, 50, 7, 16, 20, 15]
  Fragment all atoms: [8, 71, 72, 51, 55, 53, 54, 50, 7, 69, 70, 16, 76, 40, 86, 20, 78, 41, 87, 15, 75, 6, 67, 68, 37, 39, 85]
  

• C₃H₆O₄
  Fragment probability: 0.97
  Fragment mass: 276.0747
  Fragment main chain atoms: [8, 51, 55, 53, 54, 50, 7, 16]
  Fragment all atoms: [8, 71, 72, 51, 55, 53, 54, 50, 7, 69, 70, 16, 76, 40, 86]
  

• C₄H₈O₅
  Fragment probability: 0.98
  Fragment mass: 306.1006
  Fragment main chain atoms: [8, 51, 55, 53, 54, 50, 7, 16, 20]
  Fragment all atoms: [8, 71, 72, 51, 55, 53, 54, 50, 7, 69, 70, 16, 76, 40, 86, 20, 78, 41, 87]
  

• C₅H₁₀N₁O₃
  Fragment probability: 0.73
  Fragment mass: 84.0963
  Fragment main chain atoms: [15, 20]
  Fragment all atoms: [15, 75, 6, 67, 68, 37, 39, 85, 20, 78, 16, 76, 7, 69, 70, 40, 86, 41, 87]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

• The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
• The NetwrokX library is used in the CTPIC source codes.
• The Open Babel software package is used in the CTPIC source codes.

Contact: