(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: PYM
File name: alatis_output_compound.sdf
|
Formula: C3H5N1O2 Compound mass: 87.07710000000003 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.62
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C2H3O1
Fragment probability: 0.62
Fragment mass: 55.0552
Fragment main chain atoms: [1, 2]
Fragment all atoms: [1, 7, 8, 9, 2, 5]
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C3H3N1O2
Fragment probability: 0.50
Fragment mass: 71.0546
Fragment main chain atoms: [1, 2, 3]
Fragment all atoms: [1, 7, 8, 9, 2, 5, 3, 6, 4]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| PYM | 1QPB |
| 66N | 6FCS 5HTC 5HTB |
| TAY | 3A8O 3A8H |
| ROP | 4GYL 4WGF 3ZVI 1I8N 4IZU 5NYE 4IZV |
| IBO | 2JHG |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.