(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: PRM
File name: alatis_output_compound.sdf
|
Formula: C27H34N4 Compound mass: 414.5843000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.29
- Compound probability: 0.19
List of identified carbohydrate fragments:
-
C3H8N1
Fragment probability: 0.29
Fragment mass: 100.1617
Fragment main chain atoms: [1, 4, 31, 3]
Fragment all atoms: [1, 32, 33, 34, 4, 41, 42, 31, 3, 38, 39, 40]
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C3H8N1
Fragment probability: 0.29
Fragment mass: 100.1617
Fragment main chain atoms: [2, 5, 31, 3]
Fragment all atoms: [2, 35, 36, 37, 5, 43, 44, 31, 3, 38, 39, 40]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| PRM | 6ESJ 1N5R |
| DCU | 1J07 |
| ET | 1T9X 3HTJ 3V78 5FFZ 3VVY 3Q2Y 6KO7 1QVU 1OY9 5KCB 5BUC 3BR3 1JTY 4ZVK 5ER5 2ZOZ 3PM1 4HUM |
| PZ5 | 5EIH |
| 6LJ | 5JNW |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.