(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: PMV
File name: alatis_output_compound.sdf
|
Formula: C6H13O7P1 Compound mass: 228.1365000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.79
- Compound probability: 0.71
List of identified carbohydrate fragments:
-
C6H11O4
Fragment probability: 0.79
Fragment mass: 130.1414
Fragment main chain atoms: [3, 2, 6, 4, 5]
Fragment all atoms: [3, 20, 21, 13, 2, 18, 19, 6, 1, 15, 16, 17, 9, 25, 4, 22, 23, 5, 7, 8, 24]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| PMV | 2PG9 6N0X 6MDF 3GON |
| DRZ | 1M3Q 6OE7 |
| 3S4 | 4RKZ |
| PA5 | 1G98 1X82 1TZC 1X7N 1QXR 1NUH 1GZV 4LTA 4LUK 1C7R |
| R10 | 2VVQ |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.