(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: PLG
File name: alatis_output_compound.sdf
|
Formula: C10H15N2O7P1 Compound mass: 306.20850000000013 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.00
- Compound probability: 0.00
List of identified carbohydrate fragments:
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| PLG | 4LNM 3WGB 5XMT 4TN4 5GVL 1EJI 5GVM 5YFY 5XMQ 6I35 1DFO 5YG0 4TMR 3WGC 5YG2 1LW5 5YG3 2BWP 5XMP 5GVP 5GVN 5YG4 6CD1 5YFZ 4WXF 5XMV 2WK9 5XMS 3WLX 5GVK 5XMU 5YG1 4HF8 1SZR 4LNL 5XMR 1RVY |
| NMA | 1D7V |
| PDA | 5G2Q 1ELU 5XT6 5WT6 4LHG 6KG1 2Q3D 4MII 4ZU8 5ZSK |
| PP3 | 4A00 1L6F 1WC7 6DYT 1C9C |
| PDD | 3DAA 2BMK 1L6G 2ZPU 2ZR8 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.