(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: PFU
File name: alatis_output_compound.sdf
|
Formula: C9H14N3O9P1 Compound mass: 339.19540000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.55
List of identified carbohydrate fragments:
-
C7H8N1O4
Fragment probability: 1.00
Fragment mass: 158.1317
Fragment main chain atoms: [5, 7, 8, 21, 2]
Fragment all atoms: [5, 26, 13, 32, 7, 27, 15, 34, 8, 28, 3, 6, 11, 21, 2, 25, 1, 23, 24, 20]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| PFU | 3MI2 3SEC |
| FMP | 1T8S 1FMP 3RTI 1PAG 1AHB 1J1S |
| FMC | 4TTI 4TTJ 3UT6 6F4X 3NM5 6F4W 5JPC 4TTA 4TS9 1NC3 3BL6 4TS3 1MRK 1MRH 2QTT 1IFU 1Z36 1SD1 |
| FMB | 1PR1 1TC1 1JDZ 1A69 |
| FM2 | 1K9S |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.