• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: P2A
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.98
• Compound probability: 0.75

List of identified carbohydrate fragments:

• C₃H₅O₃
  Fragment probability: 0.98
  Fragment mass: 89.06979999999999
  Fragment main chain atoms: [3, 7, 4]
  Fragment all atoms: [3, 23, 24, 13, 7, 27, 15, 4, 25, 26, 14]
  

• C₃H₅O₂
  Fragment probability: 0.75
  Fragment mass: 86.089
  Fragment main chain atoms: [3, 13, 5]
  Fragment all atoms: [3, 23, 24, 13, 5, 1, 17, 18, 19, 8]
  

• C₅H₈O₄
  Fragment probability: 0.80
  Fragment mass: 116.11489999999999
  Fragment main chain atoms: [3, 7, 15, 6]
  Fragment all atoms: [3, 23, 24, 13, 7, 27, 4, 25, 26, 14, 15, 6, 2, 20, 21, 22, 9]
  

• C₅H₈O₄
  Fragment probability: 0.80
  Fragment mass: 116.11489999999999
  Fragment main chain atoms: [4, 7, 3, 13, 5]
  Fragment all atoms: [4, 25, 26, 14, 7, 27, 15, 3, 23, 24, 13, 5, 1, 17, 18, 19, 8]
  

• C₇H₁₁O₅
  Fragment probability: 0.75
  Fragment mass: 143.16
  Fragment main chain atoms: [5, 13, 3, 7, 15, 6]
  Fragment all atoms: [5, 1, 17, 18, 19, 8, 13, 3, 23, 24, 7, 27, 4, 25, 26, 14, 15, 6, 2, 20, 21, 22, 9]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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