(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: OTH
File name: alatis_output_compound.sdf
|
Formula: C6H13N1O3 Compound mass: 147.17180000000008 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.69
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C6H12N1O3
Fragment probability: 0.69
Fragment mass: 147.1718
Fragment main chain atoms: [2, 7, 5, 4, 10, 3]
Fragment all atoms: [2, 14, 15, 16, 7, 5, 21, 6, 8, 9, 23, 4, 20, 1, 11, 12, 13, 10, 3, 17, 18, 19]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| OTH | 3AH8 |
| XDT | |
| OLT | |
| 2QZ | 4V9R 4WQU 4V9S 4NVY 4NVW 4NW0 4NVU |
| NZC | 6DLY 6P81 6DJ8 5AH2 6PTR 6DJK 5AGU 5AH4 6DM6 5AGV 6PTH 6PTV |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.