(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: OTB
File name: alatis_output_compound.sdf
|
Formula: C5H10O3 Compound mass: 118.13070000000005 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.56
- Compound probability: 0.62
List of identified carbohydrate fragments:
-
C4H9O1
Fragment probability: 0.56
Fragment mass: 57.113899999999994
Fragment main chain atoms: [1, 5, 2]
Fragment all atoms: [1, 9, 10, 11, 5, 3, 15, 16, 17, 8, 2, 12, 13, 14]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| BOC | 1S1O 3NZW 2RUI 3UQP 4RSP 4QBY 3VB4 1P11 1OEX 3NZX 2ER7 4ZRO 1P12 2ER9 3NZJ 1GKT 1HPG |
| OTB | |
| 01F | 4AWT 4AWS |
| TBF | 4OG4 4OG8 1V6D 4F8P 4OG5 |
| IBU | 2K1Q |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.