(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: OPL
File name: alatis_output_compound.sdf
|
Formula: C5H10O4 Compound mass: 134.13010000000003 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.90
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C5H10O4
Fragment probability: 0.90
Fragment mass: 134.13010000000003
Fragment main chain atoms: [2, 4, 3, 5]
Fragment all atoms: [2, 13, 6, 4, 15, 7, 17, 3, 14, 1, 10, 11, 12, 5, 16, 8, 9, 18, 19]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| OPL | 4IHA |
| PAF | 1N2E 4XEQ 3Q12 4PAK 3GUZ 1N2J 2OFP 1N2B 4NQ8 |
| LTH | 4PE6 |
| EAX | 4PDH 4P9K 4PDD |
| THE | 4XFM 1XIJ |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.