(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: OMX
File name: alatis_output_compound.sdf
|
Formula: C9H11N1O4 Compound mass: 197.18750000000009 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.00
- Compound probability: 0.00
List of identified carbohydrate fragments:
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| HTY | 3RUM |
| OMX | 3VFJ 1HHF 1HHC 3VFK 1HH3 6H8T 1HHA 4KP9 3RUM |
| 2R3 | 4V9S 4V9R 4NVU 4NVW 4WQU 4NW0 4NVY |
| TYR_LFZW_DHH | |
| TYR_LEO2 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.