(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: OAK
File name: alatis_output_compound.sdf
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Formula: C13H17N1O6 Compound mass: 283.2765000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.95
List of identified carbohydrate fragments:
-
C12H16N1O6
Fragment probability: 1.00
Fragment mass: 244.22070000000005
Fragment main chain atoms: [11, 10, 9, 8, 20, 13, 12, 33, 7, 19, 14, 31, 18, 37, 30, 17, 36, 29, 16, 35]
Fragment all atoms: [11, 10, 9, 8, 28, 6, 26, 27, 15, 34, 20, 13, 32, 12, 33, 7, 4, 5, 24, 2, 22, 25, 3, 23, 19, 14, 31, 18, 37, 30, 17, 36, 29, 16, 35]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| OAK | 3G2N |
| JNB | 6R0I |
| JN2 | 6R0H |
| NBG | 1XOI 1L5Q 5D9P 3DDS 1WW2 3CEJ 3DDW 1L7X 5OYD 1EXV 3CEM 1L5S 3CEH 1EM6 3DD1 2PRJ 1FC0 1L5R |
| BG8 | 5BRD |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.