(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: NUP
File name: alatis_output_compound.sdf
|
Formula: C9H14N3O9P1 Compound mass: 339.19540000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.45
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [7, 6, 3, 21, 8]
Fragment all atoms: [7, 28, 15, 34, 6, 27, 14, 33, 3, 26, 2, 24, 25, 20, 21, 8, 29, 12]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| NUP | 3DBP 3WJZ 3THQ 2Q8Z 3WJX 3N3M 3WJY |
| FNU | 3N34 3S9Y 3N2M 3SSJ |
| 8XU | 2N4J |
| U25 | |
| 0U | 2GQ6 2G32 4WB3 4R8I 4WB2 2GQ4 2GPM 2GQ5 2GQ7 1R3O |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.