(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: NBV
File name: alatis_output_compound.sdf
|
Formula: C10H21N1O4 Compound mass: 219.27720000000016 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.73
List of identified carbohydrate fragments:
-
C6H12N1O4
Fragment probability: 1.00
Fragment mass: 190.19650000000004
Fragment main chain atoms: [7, 9, 10, 8, 5, 11]
Fragment all atoms: [7, 29, 6, 27, 28, 12, 33, 9, 31, 14, 35, 10, 32, 15, 36, 8, 30, 13, 34, 5, 25, 26, 11]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| NBV | 5IEF 2V3D |
| NND | 2V3E |
| MIG | 3L4W 5NN6 6CA1 6CA3 |
| DDM | |
| DMJ | 4AD3 4AD5 4AQ0 1KRE 4D4C 1HXK 1FO2 5MEH 3QRY 1G6I |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.