(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: MYD
File name: alatis_output_compound.sdf
|
Formula: C23H29N5O13P2 Compound mass: 645.4484999999984 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.40
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [17, 18, 22, 41, 13]
Fragment all atoms: [17, 63, 30, 69, 18, 64, 31, 70, 22, 65, 28, 41, 13, 62, 6, 56, 57, 40]
-
C5H8O2
Fragment probability: 0.60
Fragment mass: 245.08380000000002
Fragment main chain atoms: [4, 39, 42, 9, 43, 40, 6]
Fragment all atoms: [4, 52, 53, 3, 50, 51, 11, 39, 42, 9, 60, 61, 43, 40, 6, 56, 57]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| MYD | 1NF7 |
| A12 | 3ZU0 1HPU 1MR2 4MAM 4H2I 3DGR 4XYM 6GQS 6GPT 6GPH |
| AP2 | 3VTH 3FD5 5FIT 5FC6 1DKU 1AV5 2VQD |
| 8C6 | 5XP7 |
| DZD | 3D4B |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.