(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: MV2
File name: alatis_output_compound.sdf
|
Formula: C9H19N1O4 Compound mass: 205.25070000000014 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.68
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C9H18N1O4
Fragment probability: 0.68
Fragment mass: 205.25070000000002
Fragment main chain atoms: [5, 3, 4, 10, 8, 7, 9, 6]
Fragment all atoms: [5, 25, 26, 11, 31, 3, 21, 22, 4, 23, 24, 10, 8, 14, 7, 29, 13, 33, 9, 1, 2, 15, 16, 17, 18, 19, 20, 6, 27, 28, 12, 32]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| MV2 | 3AVP |
| ZZI | 2WPB |
| PAU | 3BEX 3BF1 2F9W 3AF3 5E26 3AF0 1SQ5 4O5F 5KPR 3UY4 3AVO 5B8H 2ZS9 2ZSE |
| PT3 | 3MES 2HPA |
| C4L | 4G9E |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.