(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: MBF
File name: alatis_output_compound.sdf
|
Formula: C6F1H11O5 Compound mass: 182.1465000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.92
List of identified carbohydrate fragments:
-
C6H11O5
Fragment probability: 1.00
Fragment mass: 163.14810000000006
Fragment main chain atoms: [12, 6, 3, 5, 4, 2, 19, 11, 23, 10, 18, 22, 9, 17, 21]
Fragment all atoms: [12, 6, 3, 16, 5, 4, 2, 15, 1, 13, 14, 8, 20, 19, 11, 23, 10, 18, 22, 9, 17, 21]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| GAF | 1UWR 4MOO 4MOS |
| 2FG | 1JZ0 4V45 4MOQ 1JZ2 1JZ1 3F5E 3F53 4MOL 4MOS |
| SHG | 3K4M 4MOH 5L0V 2IGO 2NLR 5EJZ 3K4L 4CN4 |
| MBF | 1GW1 1GVY |
| MAF | 1GW1 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.