(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: LIN
File name: alatis_output_compound.sdf
|
Formula: C4H6O3 Compound mass: 102.08840000000002 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.75
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C4H6O3
Fragment probability: 0.75
Fragment mass: 102.0884
Fragment main chain atoms: [4, 2, 3, 1]
Fragment all atoms: [4, 6, 7, 13, 2, 11, 12, 3, 5, 1, 8, 9, 10]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| LIN | |
| AAE | 3VDR 6CJ4 6AS5 2Y7G 3EEW 2FCP 1UJW 3I09 1QCO 1FCP 1YSL 1E3W |
| 9TY | 6JD1 6JCZ 5W3K |
| X2X | 4P8B 4OAN |
| 3HL | 2ZTL 3EEW 2ZTM 2ECQ 5LBG 6HDY |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.