(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: IRN
File name: alatis_output_compound.sdf
|
Formula: C8H13N2O7P1 Compound mass: 280.17130000000014 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.56
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [7, 6, 5, 17, 8]
Fragment all atoms: [7, 26, 12, 29, 6, 25, 11, 28, 5, 24, 3, 21, 22, 16, 17, 8, 27, 10]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| IRN | 3EPN 4S26 4S29 4S25 |
| D33 | 2M54 2K69 2K68 2KE8 2K67 |
| AIR | 3K5I 1D7A 2FWI 4S28 2FWJ 3RGG 5CLJ 4FE2 5CLI 4S27 3R5H |
| 7RP | 1L5L |
| 1RB | 1L5K |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.