(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: ICR
File name: alatis_output_compound.sdf
|
Formula: C9H14N3O9P1 Compound mass: 339.19540000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.45
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [5, 6, 8, 21, 3]
Fragment all atoms: [5, 28, 13, 32, 6, 29, 14, 33, 8, 30, 12, 21, 3, 26, 1, 23, 24, 20]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| ICR | 2FWP |
| GAR | 4ZYX 1C2T 1C3E 4ZZ3 1MEN 4ZYU 1EZ1 1RBY 1CDE 1KJ8 4ZYZ 4ZYW 5J9F 4ZYV 4ZYT 4ZYY 4ZZ2 4ZZ0 4ZZ1 |
| FGR | 2HS3 2HS4 |
| Y5P | 5AJ3 5AJ4 4V19 5APN 5APO |
| 64P | 2WB2 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.