• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: HMN
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.98
• Compound probability: 1.00

List of identified carbohydrate fragments:

• C₉H₁₇N₁O₈
  Fragment probability: 0.87
  Fragment mass: 268.24040000000014
  Fragment main chain atoms: [3, 7, 9, 10, 8, 5, 2, 6, 11]
  Fragment all atoms: [3, 27, 28, 13, 36, 7, 31, 17, 39, 9, 33, 18, 40, 10, 34, 19, 41, 8, 32, 12, 5, 29, 15, 37, 2, 25, 26, 6, 30, 16, 38, 11, 20, 21, 42]
  

• C₉H₁₇N₁O₆
  Fragment probability: 0.76
  Fragment mass: 222.21510000000004
  Fragment main chain atoms: [3, 7, 9, 10, 8, 12, 4, 1]
  Fragment all atoms: [3, 27, 28, 13, 36, 7, 31, 17, 39, 9, 33, 18, 40, 10, 34, 19, 41, 8, 32, 5, 29, 2, 25, 26, 15, 37, 12, 4, 14, 1, 22, 23, 24]
  

• C₃H₇O₃
  Fragment probability: 0.98
  Fragment mass: 104.10420000000002
  Fragment main chain atoms: [3, 7, 9]
  Fragment all atoms: [3, 27, 28, 13, 36, 7, 31, 17, 39, 9, 33, 18, 40]
  

• C₆H₁₁N₁O₄
  Fragment probability: 0.73
  Fragment mass: 132.13740000000004
  Fragment main chain atoms: [3, 7, 9, 10]
  Fragment all atoms: [3, 27, 28, 13, 36, 7, 31, 17, 39, 9, 33, 18, 40, 10, 34, 8, 32, 5, 29, 12, 19, 41]
  

• C₉H₁₄N₁O₆
  Fragment probability: 0.68
  Fragment mass: 220.19930000000002
  Fragment main chain atoms: [11, 6, 2, 5, 8, 12, 4, 1]
  Fragment all atoms: [11, 20, 21, 42, 6, 30, 16, 38, 2, 25, 26, 5, 29, 15, 37, 8, 32, 10, 34, 9, 33, 19, 41, 12, 4, 14, 1, 22, 23, 24]
  

• C₉H₁₆N₁O₇
  Fragment probability: 0.79
  Fragment mass: 220.19930000000008
  Fragment main chain atoms: [11, 6, 2, 5, 8, 10, 9]
  Fragment all atoms: [11, 20, 21, 42, 6, 30, 16, 38, 2, 25, 26, 5, 29, 15, 37, 8, 32, 12, 10, 34, 19, 41, 9, 33, 7, 31, 3, 27, 28, 17, 39, 18, 40]
  

• C₆H₁₀N₁O₅
  Fragment probability: 0.77
  Fragment mass: 190.17340000000004
  Fragment main chain atoms: [11, 6, 2, 5, 8, 10]
  Fragment all atoms: [11, 20, 21, 42, 6, 30, 16, 38, 2, 25, 26, 5, 29, 15, 37, 8, 32, 12, 10, 34, 19, 41]
  

• C₉H₁₆N₁O₅
  Fragment probability: 0.68
  Fragment mass: 174.17400000000006
  Fragment main chain atoms: [1, 4, 12, 8, 10, 9]
  Fragment all atoms: [1, 22, 23, 24, 4, 14, 12, 8, 32, 5, 29, 2, 25, 26, 15, 37, 10, 34, 19, 41, 9, 33, 7, 31, 3, 27, 28, 17, 39, 18, 40]
  

• C₆H₁₀N₁O₃
  Fragment probability: 0.62
  Fragment mass: 144.14810000000003
  Fragment main chain atoms: [1, 4, 12, 8, 10]
  Fragment all atoms: [1, 22, 23, 24, 4, 14, 12, 8, 32, 5, 29, 2, 25, 26, 15, 37, 10, 34, 19, 41]
  

• C₆H₁₀N₁O₃
  Fragment probability: 0.62
  Fragment mass: 84.09630000000001
  Fragment main chain atoms: [9, 10]
  Fragment all atoms: [9, 33, 7, 31, 3, 27, 28, 17, 39, 18, 40, 10, 34, 8, 32, 5, 29, 12, 19, 41]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

• The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
• The NetwrokX library is used in the CTPIC source codes.
• The Open Babel software package is used in the CTPIC source codes.

Contact: