Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: HB2
File name: alatis_output_compound.sdf

Formula: C18H24N4O1
Compound mass: 312.4084000000001
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.50
  • Compound probability: 0.26


List of identified carbohydrate fragments:

  • C4H9N1O1
    Fragment probability: 0.50
    Fragment mass: 70.1127
    Fragment main chain atoms: [2, 18, 3]
    Fragment all atoms: [2, 27, 28, 29, 18, 11, 43, 44, 22, 23, 47, 3, 30, 31, 32]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
HB24R6A
IDQ5ZSA
5ZSB
5ZSC
5ZSE
5ZSD
5AWD
M0A5AWB
RX83W3L
3W3N
5GMH
3W3M
5ANS
9K35ZSG

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).