(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: H2B
File name: alatis_output_compound.sdf
|
Formula: C9H13N5O3 Compound mass: 239.2307000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.64
- Compound probability: 0.47
List of identified carbohydrate fragments:
-
C5H10N1O2
Fragment probability: 0.64
Fragment mass: 85.10419999999999
Fragment main chain atoms: [1, 3, 6]
Fragment all atoms: [1, 18, 19, 20, 3, 23, 15, 29, 6, 25, 4, 24, 2, 21, 22, 12, 16, 30]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| H2B | 4CX1 4CX2 2V6T 4NOS 1DWW 2FBZ 1TG2 |
| FNX | 5J63 |
| Y19 | 2VI5 |
| CR0 | 1Z1P 1S6Z 1Z1Q |
| 9SL | 6J8H 6O0F 6A91 6O0E 6J8G |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.