(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: GXX
File name: alatis_output_compound.sdf
|
Formula: C16H28O14 Compound mass: 444.38399999999996 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C6H11O6
Fragment probability: 1.00
Fragment mass: 179.14750000000006
Fragment main chain atoms: [8, 13, 10, 14, 28, 6, 21, 41, 54, 43, 23, 56, 25, 47, 58]
Fragment all atoms: [8, 13, 46, 30, 10, 14, 28, 6, 39, 1, 31, 32, 17, 50, 21, 41, 54, 43, 23, 56, 25, 47, 58]
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C5H8O5
Fragment probability: 1.00
Fragment mass: 148.11370000000002
Fragment main chain atoms: [11, 12, 5, 3, 27, 16, 24, 44, 57, 38, 19, 52]
Fragment all atoms: [11, 12, 45, 29, 5, 3, 35, 36, 27, 16, 49, 30, 24, 44, 57, 38, 19, 52]
-
C5H9O5
Fragment probability: 1.00
Fragment mass: 149.12160000000003
Fragment main chain atoms: [9, 7, 4, 2, 26, 15, 22, 42, 55, 40, 20, 53, 18, 37, 51]
Fragment all atoms: [9, 7, 4, 2, 33, 34, 26, 15, 48, 29, 22, 42, 55, 40, 20, 53, 18, 37, 51]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| MDM | 2EF6 1NIV 5EYX 4K1Y 5EYY 5U38 |
| GXX | 4WN2 4WMI 5VYG 4WMK |
| LB2 | 5V2J 5U6S 3F5L 4R2F 5U6N 3AHT 5V2K |
| NGR | 2K46 5MAN |
| 3B7 | 4TZ5 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.