• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: GXP
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.96
• Compound probability: 1.00

List of identified carbohydrate fragments:

• C₅H₆O₅
  Fragment probability: 0.96
  Fragment mass: 146.0979
  Fragment main chain atoms: [2, 3, 1, 4, 5]
  Fragment all atoms: [2, 13, 6, 3, 14, 7, 15, 1, 11, 12, 4, 8, 5, 10, 9, 16]
  

• C₄H₅O₂
  Fragment probability: 0.56
  Fragment mass: 56.0631
  Fragment main chain atoms: [2, 3]
  Fragment all atoms: [2, 13, 6, 3, 14, 1, 11, 12, 4, 7, 15]
  

• C₄H₅O₃
  Fragment probability: 0.69
  Fragment mass: 130.0985
  Fragment main chain atoms: [2, 3, 1, 4]
  Fragment all atoms: [2, 13, 6, 3, 14, 7, 15, 1, 11, 12, 4, 8]
  

• C₄H₅O₄
  Fragment probability: 0.96
  Fragment mass: 129.09060000000002
  Fragment main chain atoms: [5, 4, 1, 3]
  Fragment all atoms: [5, 10, 9, 16, 4, 8, 1, 11, 12, 3, 14, 7, 15]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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