(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: GLO
File name: alatis_output_compound.sdf
|
Formula: C6H12O6 Compound mass: 180.15540000000007 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C6H12O6
Fragment probability: 1.00
Fragment mass: 180.15540000000007
Fragment main chain atoms: [1, 3, 5, 6, 4, 2]
Fragment all atoms: [1, 13, 7, 3, 16, 9, 21, 5, 18, 11, 23, 6, 19, 12, 24, 4, 17, 10, 22, 2, 14, 15, 8, 20]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AOS | 3M0M 4GJJ 3PH4 2I57 |
| GLO | 4M56 1EZ9 3ZMR 3KBN 1XYM 3FXP 6QND 4QQ7 1XYB 1FBO 1AC0 3WKI 4IW2 3KCO 2ZYD 1FQD 1FQC |
| 3BU | 3WW4 |
| DNO | 2WKU 2WL5 3BDK |
| DXG | 1ECQ |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.