(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: GFP
File name: alatis_output_compound.sdf
|
Formula: C6F1H12O8P1 Compound mass: 262.1264000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.69
List of identified carbohydrate fragments:
-
C6H10O5
Fragment probability: 1.00
Fragment mass: 162.14020000000005
Fragment main chain atoms: [14, 6, 3, 5, 4, 2, 10, 22, 26, 9, 21, 25]
Fragment all atoms: [14, 6, 23, 15, 3, 20, 5, 4, 2, 19, 1, 17, 18, 8, 24, 10, 22, 26, 9, 21, 25]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| GFP | 4GPB |
| JVS | 6MNV |
| JV4 | 6MLF |
| M1P | 6NOQ 6GH3 3WAU 2FUE 6NOL 2X65 1PCJ |
| GL1 | 1Z4O 1Z4N |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.