(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: GF7
File name: alatis_output_compound.sdf
|
Formula: C13H13N1O4 Compound mass: 247.2461000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.62
- Compound probability: 0.17
List of identified carbohydrate fragments:
-
C2H3O1
Fragment probability: 0.62
Fragment mass: 39.0558
Fragment main chain atoms: [1, 8]
Fragment all atoms: [1, 19, 20, 21, 8, 15]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| GF7 | 3GQZ |
| 3GV | 3GVB |
| GEP | 25C8 |
| PDM | 1L2O 1KWO |
| NY4 | 5QRS |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
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- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.