(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: GBS
File name: alatis_output_compound.sdf
|
Formula: C8H9N3O2 Compound mass: 179.17560000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.00
- Compound probability: 0.00
List of identified carbohydrate fragments:
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| GBS | 1RTK 1GBT 3RXJ 2AH4 3DFL |
| 1JZ | 3FVF |
| 9XQ | 5OLF |
| XP1 | 2V6N 2VJ1 |
| TYZ | 3W92 3W8V 1W5K 3W93 5CUG 5PBD 1W5J 2BNI |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.