(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: F9V
File name: alatis_output_compound.sdf
|
Formula: C10H10O4 Compound mass: 194.1836000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.54
- Compound probability: 0.79
List of identified carbohydrate fragments:
-
C7H7O4
Fragment probability: 0.54
Fragment mass: 129.0906
Fragment main chain atoms: [9, 6, 8, 10]
Fragment all atoms: [9, 11, 12, 23, 6, 20, 21, 8, 22, 7, 4, 5, 18, 19, 10, 13, 14, 24]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| FSL | 4UTV |
| F9V | 4UTV |
| PPY | 3H7J 1BW9 4U6S 2Q5O 2ZF4 4KIF 4KIC 4DQD 3H9A 1LCO 6A11 3LUY 6A1P 6HNV 3H7Y |
| LLA | |
| HF2 | 4KIC 4M74 4KIF 4KIB 4M6X 4M73 4M72 4M71 3AH8 4M6Y |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.