Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: ERS
File name: alatis_output_compound.sdf

Formula: C20H24N6O4
Compound mass: 412.44140000000004
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.33


List of identified carbohydrate fragments:

  • C5H9N1O4
    Fragment probability: 1.00
    Fragment mass: 147.12890000000002
    Fragment main chain atoms: [17, 16, 14, 30, 20]
    Fragment all atoms: [17, 50, 29, 54, 16, 49, 28, 53, 14, 48, 10, 44, 45, 27, 52, 30, 20, 51, 26]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
ERS6C9V
6MD5ZUU
4RDN
4X64
4LMP
26A2A9Z
2A9Y
3GU3GU8
HZ26QE0

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).