• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: EG1
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.67
• Compound probability: 0.46

List of identified carbohydrate fragments:

• C₆H₁₂N₂O₂
  Fragment probability: 0.57
  Fragment mass: 146.18699999999998
  Fragment main chain atoms: [7, 24, 9, 10, 25, 8]
  Fragment all atoms: [7, 35, 36, 5, 31, 32, 18, 24, 9, 39, 40, 10, 41, 42, 25, 8, 37, 38, 6, 33, 34, 19]
  

• C₄H₈N₁O₂
  Fragment probability: 0.67
  Fragment mass: 103.11939999999998
  Fragment main chain atoms: [7, 24, 9]
  Fragment all atoms: [7, 35, 36, 5, 31, 32, 18, 24, 9, 39, 40, 10, 41, 42, 25]
  

• C₇H₁₂N₂O₃
  Fragment probability: 0.56
  Fragment mass: 170.20839999999998
  Fragment main chain atoms: [7, 24, 9, 10, 25, 8, 6, 19, 15]
  Fragment all atoms: [7, 35, 36, 5, 31, 32, 18, 24, 9, 39, 40, 10, 41, 42, 25, 8, 37, 38, 6, 33, 34, 19, 15, 21]
  

• C₄H₈N₁O₂
  Fragment probability: 0.67
  Fragment mass: 103.11939999999998
  Fragment main chain atoms: [8, 25, 10, 9]
  Fragment all atoms: [8, 37, 38, 6, 33, 34, 19, 25, 10, 41, 42, 9, 39, 40, 24]
  

• C₃H₄N₁O₂
  Fragment probability: 0.57
  Fragment mass: 83.0884
  Fragment main chain atoms: [8, 6, 19, 15]
  Fragment all atoms: [8, 37, 38, 25, 6, 33, 34, 19, 15, 21]
  

• C₅H₈N₁O₃
  Fragment probability: 0.64
  Fragment mass: 127.1408
  Fragment main chain atoms: [9, 10, 25, 8, 6, 19, 15]
  Fragment all atoms: [9, 39, 40, 24, 10, 41, 42, 25, 8, 37, 38, 6, 33, 34, 19, 15, 21]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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